PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 145aa    MW: 16429.6 Da    PI: 10.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70400.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-0986126954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+RR++i +++  L++l+P       +K++ a++L +A +Y+k L
  EPS70400.1  86 ARQRREKISEKIRVLQKLVPGG-----TKMDTASMLDEAANYLKFL 126
                 69******************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.83177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1482135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1383132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-983131No hitNo description
Gene3DG3DSA:4.10.280.105.8E-1385135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-686126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
SKNREKQPRR ESHRCHRPNS SSTISFQNSP TIIGSSDEPD PEAIAQMKEM IYRAAAFRPV  60
NFGNETVEKP KRKNVRISND PQTVAARQRR EKISEKIRVL QKLVPGGTKM DTASMLDEAA  120
NYLKFLRSQV KALESLGPNK IDSHN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297948.15e-64hypothetical protein CARUB_v10013989mg
RefseqXP_016170037.19e-64PREDICTED: transcription factor bHLH87
SwissprotQ8S3D27e-65BH087_ARATH; Transcription factor bHLH87
TrEMBLS8CUD71e-104S8CUD7_9LAMI; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2354__AT3G21330.11e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-66bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]